Package index

All functions

alpha_diversity()

Generate Alpha Diversity Plots

barplot()

Create Barplots for Relative and Absolute Abundance

beta_diversity()

Generate Beta Diversity Ordination Plots

create_folders()

Create Project Folder Structure

creating_physeq_object()

Create a Phyloseq Object

decontam()

Decontaminate a Phyloseq Object Using Specified Methods

export_data()

Export Project Data to a Zip Archive

group_tax()

Aggregate Phyloseq Data by Taxonomic Level

heatmap()

Generate a Heatmap of Relative Abundance

hello()

Hello, world!

normalise_data()

Normalize Phyloseq Data

psdata_to_tibble()

Convert Phyloseq Data to Tibble and Export by Taxonomic Level

rarefaction_curve()

Generate and Save Rarefaction Curve

rarefying()

Rarefying Phyloseq Data

remove_mock()

Remove Mock Features from a Phyloseq Object

resolve_tree()

Resolve Multichotomies in Phyloseq Object's Tree

tax_clean()

Clean Taxonomy Table in Phyloseq Object

unify_metadata()

Unify and Format Metadata